High-Protein Pepperoni Breakfast Cups

Featured in: Weeknight Dinners

These savory breakfast cups combine the classic flavors of pizza with a protein-packed morning meal. Each cup features a fluffy egg and Greek yogurt base mixed with mozzarella, pepperoni, red bell pepper, and onion, creating a portable breakfast that's ready in just 35 minutes.

The muffin tin format makes these perfect for meal prep—bake a batch on Sunday and enjoy quick, high-protein breakfasts throughout the week. At only 2 grams of carbohydrates per serving, they're ideal for low-carb and high-protein diets.

Customize the fillings based on your preferences: swap pepperoni for cooked sausage or bacon, add vegetables like spinach or mushrooms, or experiment with different cheese varieties. Serve warm with a side of pizza sauce for dipping.

Updated on Tue, 10 Feb 2026 20:31:08 GMT
Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, featuring melted mozzarella and diced red peppers. Pin It
Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, featuring melted mozzarella and diced red peppers. | pecanpan.com

Start your morning with a protein-packed twist on a classic favorite. These High-Protein Pepperoni Breakfast Cups are savory mini frittatas loaded with melted mozzarella, mini pepperoni slices, and authentic pizza seasonings, all baked into convenient muffin-sized portions for an easy on-the-go breakfast.

Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, featuring melted mozzarella and diced red peppers. Pin It
Golden-brown High-Protein Pepperoni Breakfast Cups sit in a muffin tin, featuring melted mozzarella and diced red peppers. | pecanpan.com

Using Greek yogurt in the egg base ensures a creamy texture while boosting the nutritional profile, making these breakfast cups as satisfying as they are delicious. They provide a quick energy boost without the carb-heavy lag of traditional breakfast pastries.

Ingredients

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  • Egg Mixture: 6 large eggs, 1/2 cup plain Greek yogurt (unsweetened), 1/4 cup milk, 1/4 tsp salt, 1/4 tsp black pepper, 1/2 tsp dried oregano, 1/2 tsp dried basil.
  • Filling: 3/4 cup shredded mozzarella cheese, 1/2 cup mini pepperoni slices (or regular pepperoni, chopped), 1/4 cup finely diced red bell pepper, 2 tbsp finely diced red onion, 2 tbsp grated Parmesan cheese, 2 tbsp pizza sauce.

Instructions

Step 1
Preheat oven to 375°F (190°C). Grease a 6-cup muffin tin or line with silicone liners.
Step 2
In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth.
Step 3
In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce.
Step 4
Evenly divide the filling mixture among the muffin cups.
Step 5
Pour the egg mixture over the filling, filling each cup about 3/4 full. Use a fork to gently stir each cup to distribute the filling.
Step 6
Bake for 18–20 minutes, or until the centers are just set and tops are lightly golden.
Step 7
Cool for 5 minutes before removing from the tin. Serve warm with extra pizza sauce if desired.

Zusatztipps für die Zubereitung

To prevent sticking, ensure the muffin tin is well-greased or use silicone liners. Don't skip the cooling period; letting the cups sit for 5 minutes allows them to firm up, making them much easier to remove from the tin without breaking.

Varianten und Anpassungen

For a vegetarian version, simply omit the pepperoni and add sautéed mushrooms or fresh spinach. You can also experiment with different cheeses like cheddar or provolone instead of mozzarella to customize the flavor to your preference.

Serviervorschläge

Serve these breakfast cups warm alongside a small bowl of pizza sauce for dipping. They also pair well with a fresh side salad or a piece of whole-grain toast if you aren't following a low-carb diet.

Savory High-Protein Pepperoni Breakfast Cups are plated with a small bowl of warm pizza sauce for dipping. Pin It
Savory High-Protein Pepperoni Breakfast Cups are plated with a small bowl of warm pizza sauce for dipping. | pecanpan.com

These High-Protein Pepperoni Breakfast Cups are the ultimate solution for anyone needing a fast, savory, and nutritious start to their day. With their classic pizza flavor and impressive protein count, they are sure to become a staple in your meal prep rotation.

Questions & Answers

Can I make these breakfast cups ahead of time?

Yes, these cups are excellent for meal prep. Store cooled cups in an airtight container in the refrigerator for up to 4 days. Reheat gently in the microwave for 30-60 seconds before serving.

What's the purpose of Greek yogurt in the egg mixture?

Greek yogurt adds extra protein and creates a creamier, fluffier texture while keeping the cups moist. Its mild tang complements the savory pepperoni and cheese without overpowering the other flavors.

Can I freeze these breakfast cups?

Absolutely. Allow the cups to cool completely, then freeze individually on a baking sheet before transferring to a freezer-safe bag. They'll keep for up to 3 months. Thaw overnight in the refrigerator or reheat from frozen in the microwave.

How do I know when the cups are fully baked?

The cups are done when the centers are just set—no longer liquid but still slightly jiggly—and the tops are lightly golden. A toothpick inserted in the center should come out clean. Overbaking may cause the eggs to become rubbery.

Can I use a regular 12-cup muffin tin?

Yes, you can use a standard 12-cup muffin tin. Simply fill only 6 cups with the mixture, or double the ingredients to make 12 cups. If making 12, keep the baking time the same but check for doneness a few minutes earlier.

What vegetables work well in these cups?

Beyond the red bell pepper, try adding sautéed mushrooms, spinach, diced zucchini, or sun-dried tomatoes. For vegetables with high water content like spinach or mushrooms, sauté them first to prevent excess moisture in the cups.

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High-Protein Pepperoni Breakfast Cups

Savory mini cups with pepperoni, mozzarella, and pizza flavors baked in muffin tins.

Prep Time
15 minutes
Time to Cook
20 minutes
Overall Time
35 minutes
Created by Anthony Hughes


Skill Level Easy

Cuisine American

Makes 3 Portions

Dietary Details Reduced Carbs

What You Need

Egg Mixture

01 6 large eggs
02 1/2 cup plain Greek yogurt, unsweetened
03 1/4 cup whole milk
04 1/4 teaspoon salt
05 1/4 teaspoon black pepper
06 1/2 teaspoon dried oregano
07 1/2 teaspoon dried basil

Filling

01 3/4 cup shredded mozzarella cheese
02 1/2 cup mini pepperoni slices
03 1/4 cup finely diced red bell pepper
04 2 tablespoons finely diced red onion
05 2 tablespoons grated Parmesan cheese
06 2 tablespoons pizza sauce

How-To

Step 01

Prepare Muffin Tin: Preheat oven to 375°F. Grease a 6-cup muffin tin or line with silicone liners.

Step 02

Mix Egg Base: In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth and well combined.

Step 03

Combine Fillings: In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce.

Step 04

Distribute Filling: Evenly divide the filling mixture among the muffin cups, distributing ingredients as equally as possible.

Step 05

Add Egg Mixture: Pour the egg mixture over the filling, filling each cup approximately 3/4 full. Use a fork to gently stir each cup to distribute the filling evenly.

Step 06

Bake: Bake for 18 to 20 minutes, or until the centers are just set and tops are lightly golden.

Step 07

Cool and Serve: Cool for 5 minutes before removing from the tin. Serve warm, optionally with additional pizza sauce on the side.

Tools You Need

  • 6-cup muffin tin
  • Mixing bowls
  • Whisk
  • Measuring cups and spoons
  • Fork

Allergy Notice

Review each ingredient, check for allergens, and talk to a professional if needed.
  • Contains eggs
  • Contains milk and dairy products
  • May contain gluten if pepperoni or pizza sauce contain wheat derivatives; verify packaging labels

Nutrition Details (each serving)

Nutritional info is for reference and isn’t medical guidance.
  • Kcal: 135
  • Fats: 9 g
  • Carbohydrates: 2 g
  • Proteins: 11 g

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