Breakfast Egg Muffins

Featured in: Family Meals

Start your morning with these protein-rich handheld muffins featuring fluffy eggs, melted sharp cheddar, savory crumbled bacon, and colorful diced bell peppers. The simple batter comes together in minutes—just whisk eggs with milk, fold in your mix-ins, and bake until golden and set.

These versatile muffins are perfect for meal prep, storing beautifully in the refrigerator for up to five days or in the freezer for longer keeping. Customize with your favorite vegetables, swap bacon for sausage or ham, or keep them vegetarian with spinach and mushrooms.

Updated on Sun, 01 Feb 2026 11:04:00 GMT
Golden-brown Breakfast Egg Muffins with melted cheddar cheese, crumbled bacon, and diced bell peppers on a white plate. Pin It
Golden-brown Breakfast Egg Muffins with melted cheddar cheese, crumbled bacon, and diced bell peppers on a white plate. | pecanpan.com

On a chilly Sunday morning, I watched my neighbor pull a tray of these golden muffins from her oven, steam curling into the air. She handed me one still warm, and I bit into melted cheddar, crisp bacon, and sweet peppers all held together in a fluffy egg embrace. I went home and made a batch that same afternoon. Now they live in my freezer, ready to rescue any frantic weekday start.

I made these for my brother the morning he left for a road trip, wrapping six in foil while he loaded his car. He texted me two states away to say they were better cold than the gas station croissant he almost bought. That message made me smile for hours. Sometimes the simplest food travels the farthest.

Ingredients

  • Large eggs: The foundation of every muffin, whisked until they turn frothy and light so the baked texture stays tender instead of rubbery.
  • Milk: Just half a cup loosens the eggs and adds a subtle creaminess that keeps each bite from feeling dense or dry.
  • Shredded cheddar cheese: Sharp cheddar melts into pockets of salt and richness, though I have used pepper jack when I wanted a little heat.
  • Diced bell peppers: Red, green, or yellow all work beautifully, their sweetness brightening every forkful and adding color that makes the tin look like confetti.
  • Diced onions: I dice mine small so they soften completely in the oven and do not crunch, their gentle bite rounding out the savory flavors.
  • Cooked and crumbled bacon: Crisp bacon brings smokiness and texture, though crumbled sausage or diced ham can step in when that is what you have on hand.
  • Salt, black pepper, garlic powder, and paprika: This quartet seasons the egg base with warmth and depth, the paprika adding a whisper of color and gentle spice.
  • Cooking spray or olive oil: A light coat on the muffin tin means the muffins pop out cleanly instead of tearing and sticking in frustrating little shreds.

Instructions

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Preheat and Prepare:
Set your oven to 350 degrees Fahrenheit and grease every cup of a standard muffin tin until it glistens. This step saves you from prying out stuck edges later.
Whisk the Base:
In a large bowl, whisk eggs and milk together until the mixture turns pale and slightly frothy, which takes about thirty seconds of steady motion. That froth means air, and air means tender muffins.
Fold in the Fillings:
Stir in the cheddar, bell peppers, onions, bacon, salt, pepper, garlic powder, and paprika, mixing just until everything is evenly distributed. Overmixing can make the eggs tough, so I stop as soon as I see no bare streaks.
Fill the Tin:
Pour the mixture into each muffin cup until it reaches about two thirds full, leaving room for the eggs to puff as they bake. I use a small ladle to keep the portions even.
Bake Until Golden:
Slide the tin into the oven and bake for eighteen to twenty minutes, watching for lightly golden tops and firm centers. A toothpick poked into the middle should come out clean, not wet.
Cool and Release:
Let the muffins rest in the tin for five minutes so they firm up and release more easily. Run a butter knife around any stubborn edges and lift them out gently.
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Wash produce, prep ingredients, rinse cookware, and streamline cooking tasks with an all-in-one sink workstation.
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Savory Breakfast Egg Muffins filled with bacon, peppers, and onions served warm alongside a dollop of salsa for dipping. Pin It
Savory Breakfast Egg Muffins filled with bacon, peppers, and onions served warm alongside a dollop of salsa for dipping. | pecanpan.com

One morning I reheated three of these while my daughter sat at the counter doing homework, and she paused mid equation to say they smelled like Saturday. I realized she was right. These muffins carry the warmth of slow mornings even when the clock is racing.

Storage and Reheating

I store cooled muffins in an airtight container in the fridge for up to five days, stacking them with parchment between layers so they do not stick. For longer keeping, I freeze them in a single layer on a baking sheet, then transfer to a freezer bag once solid. Reheat straight from frozen in the microwave for forty five seconds, or thaw overnight in the fridge and warm for twenty.

Customizing Your Muffins

Swap the bacon for cooked sausage or diced ham, or leave out meat entirely and fold in fresh spinach or sliced mushrooms for a vegetarian version. I have tried feta instead of cheddar when I wanted a tangy bite, and pepper jack when I craved a little heat. Each variation feels like a new recipe, though the method stays exactly the same.

Serving Suggestions

I love these warm with a drizzle of hot sauce or a spoonful of salsa on the side, the acidity cutting through the richness of the eggs and cheese. They pair beautifully with fresh fruit or a handful of roasted potatoes if you want a fuller plate.

  • Serve with sliced avocado and a sprinkle of flaky salt for a creamy contrast.
  • Pack them in a lunchbox with cherry tomatoes and a small container of Greek yogurt.
  • Reheat and tuck into a toasted English muffin for an on the go breakfast sandwich.
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Freshly baked gluten-free Breakfast Egg Muffins packed with protein, perfect for a handheld breakfast on busy weekday mornings. Pin It
Freshly baked gluten-free Breakfast Egg Muffins packed with protein, perfect for a handheld breakfast on busy weekday mornings. | pecanpan.com

These muffins have become my quiet morning insurance, proof that a little weekend effort can buy back peace on a dozen hurried mornings. I hope they do the same for you.

Questions & Answers

Can I make these egg muffins ahead of time?

Absolutely. These muffins store well in an airtight container in the refrigerator for up to five days. They also freeze beautifully—thaw overnight in the fridge and reheat in the microwave for a quick breakfast.

What vegetables work best in these muffins?

Bell peppers, onions, spinach, mushrooms, and diced tomatoes all work wonderfully. Just be sure to dice vegetables finely so they cook evenly and distribute throughout each muffin.

Can I use egg whites instead of whole eggs?

Yes. Substitute with liquid egg whites or a combination of whole eggs and whites. The muffins may be slightly less fluffy but still delicious and protein-packed.

How do I prevent the muffins from sticking to the tin?

Generously grease your muffin tin with cooking spray or olive oil, paying special attention to the bottoms and sides. Letting them cool for five minutes before loosening with a knife also helps release them cleanly.

What's the best way to reheat these muffins?

Reheat individual muffins in the microwave for 30-45 seconds until warm throughout. For a crispier exterior, reheat in a 350°F oven for about 10 minutes.

Breakfast Egg Muffins

Protein-packed handheld breakfast with eggs, cheddar, bacon, and veggies. Make ahead for busy mornings.

Prep Time
10 minutes
Time to Cook
20 minutes
Overall Time
30 minutes
Created by Anthony Hughes


Skill Level Easy

Cuisine American

Makes 6 Portions

Dietary Details No Gluten, Reduced Carbs

What You Need

Eggs & Dairy

01 6 large eggs
02 1/2 cup milk
03 1/2 cup shredded cheddar cheese

Vegetables

01 1/2 cup diced bell peppers (red, green, or yellow)
02 1/2 cup diced onions

Proteins

01 1/2 cup cooked and crumbled bacon

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon garlic powder
04 1/4 teaspoon paprika

For Greasing

01 Cooking spray or olive oil for muffin tin

How-To

Step 01

Preheat Oven: Preheat oven to 350°F.

Step 02

Prepare Muffin Tin: Grease a standard 12-cup muffin tin with cooking spray or olive oil.

Step 03

Combine Eggs and Milk: In a large bowl, whisk together eggs and milk until well combined and slightly frothy.

Step 04

Mix Ingredients: Stir in cheddar cheese, bell peppers, onions, bacon, salt, black pepper, garlic powder, and paprika until evenly mixed.

Step 05

Fill Muffin Tin: Pour the mixture into the prepared muffin tin, filling each cup approximately 2/3 full.

Step 06

Bake: Bake for 18 to 20 minutes, or until muffins are set and lightly golden. A toothpick inserted in the center should come out clean.

Step 07

Cool and Remove: Remove from oven and let cool for 5 minutes. Carefully loosen muffins with a knife if needed and remove from tin.

Step 08

Serve or Store: Serve warm, or cool completely and store in an airtight container in the refrigerator for up to 5 days. Reheat in the microwave before serving.

Tools You Need

  • 12-cup muffin tin
  • Mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergy Notice

Review each ingredient, check for allergens, and talk to a professional if needed.
  • Contains eggs and dairy milk
  • May contain pork depending on protein choice
  • Verify labels on sausage and add-ins for gluten content

Nutrition Details (each serving)

Nutritional info is for reference and isn’t medical guidance.
  • Kcal: 150
  • Fats: 10 g
  • Carbohydrates: 2 g
  • Proteins: 11 g